J4_8OVE_001
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CAUUACA(PSU)C*GCC*GAGC*GG
- Length
- 18 nucleotides
- Bulged bases
- 8OVE|1|AA|C|129
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.433
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.3
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|AA|C|124
8OVE|1|AA|A|125
8OVE|1|AA|U|126
8OVE|1|AA|U|127
8OVE|1|AA|A|128
8OVE|1|AA|C|129
8OVE|1|AA|A|130
8OVE|1|AA|PSU|131
8OVE|1|AA|C|132
*
8OVE|1|AA|G|401
8OVE|1|AA|C|402
8OVE|1|AA|C|403
*
8OVE|1|AA|G|451
8OVE|1|AA|A|452
8OVE|1|AA|G|453
8OVE|1|AA|C|454
*
8OVE|1|AA|G|476
8OVE|1|AA|G|477
Current chains
- Chain AA
- SSU rRNA
Nearby chains
- Chain A1
- 40S ribosomal protein S4
- Chain A5
- 40S ribosomal protein S8
- Chain AE
- 40S ribosomal proteins S11, putative
- Chain AS
- 40S ribosomal protein S23, putative
Coloring options: