J4_8OVE_011
3D structure
- PDB id
- 8OVE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF TRYPANOSOMA BRUCEI PROCYCLIC FORM 80S RIBOSOME : TB11CS6H1 snoRNA mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAG*UUGAU*ACU*AAG
- Length
- 16 nucleotides
- Bulged bases
- 8OVE|1|BB|A|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8OVE_011 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1837
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.2
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8OVE|1|BB|C|1097
8OVE|1|BB|U|1098
8OVE|1|BB|A|1099
8OVE|1|BB|A|1100
8OVE|1|BB|G|1101
*
8OVE|1|BB|U|1155
8OVE|1|BB|U|1156
8OVE|1|BB|G|1157
8OVE|1|BB|A|1158
8OVE|1|BB|U|1159
*
8OVE|1|BB|A|1184
8OVE|1|BB|C|1185
8OVE|1|BB|U|1186
*
8OVE|1|BB|A|1195
8OVE|1|BB|A|1196
8OVE|1|BB|G|1197
Current chains
- Chain BB
- LSUb rRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BU
- 60S ribosomal protein L21E, putative
- Chain Bt
- 60S ribosomal protein L44
- Chain Bu
- 60S ribosomal protein L5, putative
Coloring options: