J4_8PKL_008

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8PKL_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.054

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|A|1772
8PKL|1|7|A|1773
8PKL|1|7|C|1774
8PKL|1|7|U|1775
8PKL|1|7|G|1776
*
8PKL|1|7|C|1788
8PKL|1|7|A|1789
8PKL|1|7|C|1790
8PKL|1|7|A|1791
8PKL|1|7|G|1792
*
8PKL|1|7|U|1827
8PKL|1|7|G|1828
8PKL|1|7|A|1829
8PKL|1|7|C|1830
*
8PKL|1|7|G|1975
8PKL|1|7|U|1976
8PKL|1|7|A|1977
8PKL|1|7|A|1978
8PKL|1|7|U|1979

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2