J4_8QCQ_008
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GCAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QCQ_008 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0526
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8QCQ|1|A|G|1801
8QCQ|1|A|A|1802
8QCQ|1|A|C|1803
8QCQ|1|A|U|1804
8QCQ|1|A|G|1805
*
8QCQ|1|A|C|1817
8QCQ|1|A|A|1818
8QCQ|1|A|C|1819
8QCQ|1|A|A|1820
8QCQ|1|A|G|1821
*
8QCQ|1|A|U|1856
8QCQ|1|A|G|1857
8QCQ|1|A|A|1858
8QCQ|1|A|C|1859
*
8QCQ|1|A|G|2004
8QCQ|1|A|C|2005
8QCQ|1|A|A|2006
8QCQ|1|A|A|2007
8QCQ|1|A|C|2008
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: