J4_8QCQ_010
3D structure
- PDB id
- 8QCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- B. subtilis ApdA-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8QCQ|1|A|A|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8QCQ_010 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.0704
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8QCQ|1|A|C|2314
8QCQ|1|A|A|2315
8QCQ|1|A|A|2316
8QCQ|1|A|A|2317
8QCQ|1|A|G|2318
*
8QCQ|1|A|U|2372
8QCQ|1|A|U|2373
8QCQ|1|A|G|2374
8QCQ|1|A|A|2375
8QCQ|1|A|C|2376
*
8QCQ|1|A|G|2399
8QCQ|1|A|G|2400
8QCQ|1|A|G|2401
*
8QCQ|1|A|C|2410
8QCQ|1|A|G|2411
8QCQ|1|A|G|2412
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L18
- Chain W
- Large ribosomal subunit protein bL27
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