3D structure

PDB id
8QYX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.78 Å

Loop

Sequence
CC*GAGUCG*CAAAGCG*UAAG
Length
19 nucleotides
Bulged bases
8QYX|1|A2|C|309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8QYX_001 not in the Motif Atlas
Homologous match to J4_8P9A_012
Geometric discrepancy: 0.1154
The information below is about J4_8P9A_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_94698.1
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
Number of instances in this motif group
10

Unit IDs

8QYX|1|A2|C|111
8QYX|1|A2|C|112
*
8QYX|1|A2|G|278
8QYX|1|A2|A|279
8QYX|1|A2|G|280
8QYX|1|A2|U|281
8QYX|1|A2|C|282
8QYX|1|A2|G|283
*
8QYX|1|A2|C|304
8QYX|1|A2|A|305
8QYX|1|A2|A|306
8QYX|1|A2|A|307
8QYX|1|A2|G|308
8QYX|1|A2|C|309
8QYX|1|A2|G|310
*
8QYX|1|A2|U|327
8QYX|1|A2|A|328
8QYX|1|A2|A|329
8QYX|1|A2|G|330

Current chains

Chain A2
28S rRNA

Nearby chains

Chain F1
60S ribosomal protein L13
Chain H1
60S ribosomal protein L15
Chain b1
60S ribosomal protein L35
Chain c1
60S ribosomal protein L36

Coloring options:


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