J4_8R55_015

3D structure

PDB id

8R55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.57 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8R55_015 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1582

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

8R55|1|X|C|2314
8R55|1|X|A|2315
8R55|1|X|A|2316
8R55|1|X|A|2317
8R55|1|X|G|2318
*
8R55|1|X|U|2372
8R55|1|X|U|2373
8R55|1|X|G|2374
8R55|1|X|A|2375
8R55|1|X|C|2376
*
8R55|1|X|G|2399
8R55|1|X|G|2400
8R55|1|X|G|2401
*
8R55|1|X|C|2410
8R55|1|X|G|2411
8R55|1|X|G|2412

Current chains

Chain X

23S RNA (2887-MER)

Nearby chains

Chain 1

Large ribosomal subunit protein bL33

Chain 3

Large ribosomal subunit protein bL35

Chain u

Large ribosomal subunit protein bL27