J4_8RDV_008

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AACUG*CACAG*UGAU*AUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8RDV_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0566

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8RDV|1|Z2|A|1758
8RDV|1|Z2|A|1759
8RDV|1|Z2|C|1760
8RDV|1|Z2|U|1761
8RDV|1|Z2|G|1762
*
8RDV|1|Z2|C|1774
8RDV|1|Z2|A|1775
8RDV|1|Z2|C|1776
8RDV|1|Z2|A|1777
8RDV|1|Z2|G|1778
*
8RDV|1|Z2|U|1813
8RDV|1|Z2|G|1814
8RDV|1|Z2|A|1815
8RDV|1|Z2|U|1816
*
8RDV|1|Z2|A|1961
8RDV|1|Z2|U|1962
8RDV|1|Z2|A|1963
8RDV|1|Z2|A|1964
8RDV|1|Z2|U|1965

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2