J4_8RDV_010
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGAAG*UUAAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 8RDV|1|Z2|A|2271
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8RDV_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.082
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RDV|1|Z2|C|2268
8RDV|1|Z2|G|2269
8RDV|1|Z2|A|2270
8RDV|1|Z2|A|2271
8RDV|1|Z2|G|2272
*
8RDV|1|Z2|U|2326
8RDV|1|Z2|U|2327
8RDV|1|Z2|A|2328
8RDV|1|Z2|A|2329
8RDV|1|Z2|C|2330
*
8RDV|1|Z2|G|2353
8RDV|1|Z2|G|2354
8RDV|1|Z2|U|2355
*
8RDV|1|Z2|A|2364
8RDV|1|Z2|G|2365
8RDV|1|Z2|G|2366
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Nc
- Large ribosomal subunit protein uL18
- Chain VH
- Large ribosomal subunit protein bL27
- Chain bk
- Large ribosomal subunit protein bL33
- Chain dh
- Large ribosomal subunit protein bL35
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