J4_8T3B_011
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8T3B|1|B5|A|623, 8T3B|1|B5|A|1026, 8T3B|1|B5|U|1029, 8T3B|1|B5|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T3B_011 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1361
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
8T3B|1|B5|A|622
8T3B|1|B5|A|623
8T3B|1|B5|G|624
*
8T3B|1|B5|C|975
8T3B|1|B5|G|976
8T3B|1|B5|A|977
8T3B|1|B5|A|978
8T3B|1|B5|A|979
8T3B|1|B5|G|980
*
8T3B|1|B5|C|1021
8T3B|1|B5|C|1022
8T3B|1|B5|A|1023
8T3B|1|B5|U|1024
8T3B|1|B5|A|1025
8T3B|1|B5|A|1026
8T3B|1|B5|A|1027
8T3B|1|B5|C|1028
8T3B|1|B5|U|1029
8T3B|1|B5|A|1030
8T3B|1|B5|U|1031
8T3B|1|B5|G|1032
*
8T3B|1|B5|U|1103
8T3B|1|B5|U|1104
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- RPS26B isoform 1
Coloring options: