J4_8UQM_013

3D structure

PDB id

8UQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQM_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0602

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UQM|1|a|A|1772
8UQM|1|a|A|1773
8UQM|1|a|C|1774
8UQM|1|a|U|1775
8UQM|1|a|G|1776
*
8UQM|1|a|C|1788
8UQM|1|a|A|1789
8UQM|1|a|C|1790
8UQM|1|a|A|1791
8UQM|1|a|G|1792
*
8UQM|1|a|U|1827
8UQM|1|a|G|1828
8UQM|1|a|A|1829
8UQM|1|a|C|1830
*
8UQM|1|a|G|1975
8UQM|1|a|U|1976
8UQM|1|a|A|1977
8UQM|1|a|A|1978
8UQM|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L2