J4_8UU8_008

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU8_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0868

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8UU8|1|A|G|1805
8UU8|1|A|A|1806
8UU8|1|A|C|1807
8UU8|1|A|U|1808
8UU8|1|A|G|1809
*
8UU8|1|A|C|1821
8UU8|1|A|A|1822
8UU8|1|A|C|1823
8UU8|1|A|A|1824
8UU8|1|A|G|1825
*
8UU8|1|A|U|1860
8UU8|1|A|G|1861
8UU8|1|A|A|1862
8UU8|1|A|C|1863
*
8UU8|1|A|G|2008
8UU8|1|A|C|2009
8UU8|1|A|A|2010
8UU8|1|A|A|2011
8UU8|1|A|C|2012

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2