J4_8VK7_003

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8VK7|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VK7_003 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1031

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8VK7|1|A|G|1425
8VK7|1|A|G|1426
8VK7|1|A|U|1427
8VK7|1|A|U|1428
8VK7|1|A|C|1429
*
8VK7|1|A|G|1453
8VK7|1|A|G|1454
8VK7|1|A|U|1455
8VK7|1|A|G|1456
8VK7|1|A|A|1457
8VK7|1|A|G|1458
*
8VK7|1|A|C|1519
8VK7|1|A|C|1520
*
8VK7|1|A|G|1815
8VK7|1|A|C|1816
8VK7|1|A|C|1817
8VK7|1|A|C|1818
8VK7|1|A|G|1819
8VK7|1|A|U|1820
8VK7|1|A|A|1821
8VK7|1|A|C|1822

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

50S Ribosomal Protein L23

Chain d

50S ribosomal protein L34