J4_8VK7_007

3D structure

PDB id

8VK7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Mycobacterium smegmatis 50S ribosomal subunit bound to HflX:50S-HflX-B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

8VK7|1|A|A|2512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VK7_007 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1177

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8VK7|1|A|C|2509
8VK7|1|A|A|2510
8VK7|1|A|A|2511
8VK7|1|A|A|2512
8VK7|1|A|G|2513
*
8VK7|1|A|U|2567
8VK7|1|A|U|2568
8VK7|1|A|G|2569
8VK7|1|A|A|2570
8VK7|1|A|C|2571
*
8VK7|1|A|G|2594
8VK7|1|A|G|2595
8VK7|1|A|G|2596
*
8VK7|1|A|C|2605
8VK7|1|A|G|2606
8VK7|1|A|G|2607

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L27

Chain c

50S Ribosomal Protein L33

Chain e

50S ribosomal protein L35