J4_8VKV_014

3D structure

PDB id

8VKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 33 nt long spacer, ops signal, RfaH, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8VKV|1|a|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VKV|1|a|C|2285
8VKV|1|a|G|2286
8VKV|1|a|A|2287
8VKV|1|a|A|2288
8VKV|1|a|G|2289
*
8VKV|1|a|U|2343
8VKV|1|a|U|2344
8VKV|1|a|G|2345
8VKV|1|a|A|2346
8VKV|1|a|C|2347
*
8VKV|1|a|G|2370
8VKV|1|a|G|2371
8VKV|1|a|U|2372
*
8VKV|1|a|A|2381
8VKV|1|a|G|2382
8VKV|1|a|G|2383

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35

Chain x

50S ribosomal protein L18