J4_8VOP_014

3D structure

PDB id

8VOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex (TTC-B) containing mRNA with a 36 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8VOP|1|a|A|2288, 8VOP|1|a|G|2382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOP|1|a|C|2285
8VOP|1|a|G|2286
8VOP|1|a|A|2287
8VOP|1|a|A|2288
8VOP|1|a|G|2289
*
8VOP|1|a|U|2343
8VOP|1|a|U|2344
8VOP|1|a|G|2345
8VOP|1|a|A|2346
8VOP|1|a|C|2347
*
8VOP|1|a|G|2370
8VOP|1|a|G|2371
8VOP|1|a|U|2372
*
8VOP|1|a|A|2381
8VOP|1|a|G|2382
8VOP|1|a|G|2383

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35

Chain x

50S ribosomal protein L18