J4_8VOR_014

3D structure

PDB id

8VOR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 51 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8VOR|1|a|A|2288, 8VOR|1|a|G|2382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VOR|1|a|C|2285
8VOR|1|a|G|2286
8VOR|1|a|A|2287
8VOR|1|a|A|2288
8VOR|1|a|G|2289
*
8VOR|1|a|U|2343
8VOR|1|a|U|2344
8VOR|1|a|G|2345
8VOR|1|a|A|2346
8VOR|1|a|C|2347
*
8VOR|1|a|G|2370
8VOR|1|a|G|2371
8VOR|1|a|U|2372
*
8VOR|1|a|A|2381
8VOR|1|a|G|2382
8VOR|1|a|G|2383

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L27

Chain k

50S ribosomal protein L33

Chain o

50S ribosomal protein L35

Chain x

50S ribosomal protein L18