J4_8VS9_010

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_010 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0864

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8VS9|1|23S|A|1772
8VS9|1|23S|A|1773
8VS9|1|23S|C|1774
8VS9|1|23S|U|1775
8VS9|1|23S|G|1776
*
8VS9|1|23S|C|1788
8VS9|1|23S|A|1789
8VS9|1|23S|C|1790
8VS9|1|23S|A|1791
8VS9|1|23S|G|1792
*
8VS9|1|23S|U|1827
8VS9|1|23S|G|1828
8VS9|1|23S|A|1829
8VS9|1|23S|C|1830
*
8VS9|1|23S|G|1975
8VS9|1|23S|U|1976
8VS9|1|23S|A|1977
8VS9|1|23S|A|1978
8VS9|1|23S|U|1979

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L02

50S ribosomal protein L2