J4_8VS9_012

3D structure

PDB id

8VS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Endogenous trans-translation complex with tmRNA*SmpB in the P site and alanyl-tRNA in the A site and deacyl-tRNA in the E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

8VS9|1|23S|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8VS9_012 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1756

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

8VS9|1|23S|C|2285
8VS9|1|23S|G|2286
8VS9|1|23S|A|2287
8VS9|1|23S|A|2288
8VS9|1|23S|G|2289
*
8VS9|1|23S|U|2343
8VS9|1|23S|U|2344
8VS9|1|23S|G|2345
8VS9|1|23S|A|2346
8VS9|1|23S|C|2347
*
8VS9|1|23S|G|2370
8VS9|1|23S|G|2371
8VS9|1|23S|U|2372
*
8VS9|1|23S|A|2381
8VS9|1|23S|G|2382
8VS9|1|23S|G|2383

Current chains

Chain 23S

23S ribosomal RNA

Nearby chains

Chain L18

50S ribosomal protein L18

Chain L27

50S ribosomal protein L27

Chain L33

Large ribosomal subunit protein bL33

Chain L35

50S ribosomal protein L35