J4_8VVQ_009
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8VVQ|1|WA|C|2439
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8VVQ|1|WA|G|2408
8VVQ|1|WA|G|2409
8VVQ|1|WA|U|2410
8VVQ|1|WA|U|2411
8VVQ|1|WA|C|2412
*
8VVQ|1|WA|G|2436
8VVQ|1|WA|G|2437
8VVQ|1|WA|U|2438
8VVQ|1|WA|C|2439
8VVQ|1|WA|A|2440
8VVQ|1|WA|G|2441
*
8VVQ|1|WA|U|2540
8VVQ|1|WA|C|2541
*
8VVQ|1|WA|G|2779
8VVQ|1|WA|G|2780
8VVQ|1|WA|C|2781
8VVQ|1|WA|C|2782
8VVQ|1|WA|G|2783
8VVQ|1|WA|U|2784
8VVQ|1|WA|A|2785
8VVQ|1|WA|C|2786
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain FA
- L34
- Chain GA
- L35
- Chain IA
- L37
- Chain JA
- eL38
- Chain KA
- eL39
- Chain Q
- eL19
- Chain W
- uL23
- Chain YA
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: