J4_8WHY_009
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 8WHY|1|A|A|2512
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8WHY_009 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1024
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8WHY|1|A|C|2509
8WHY|1|A|A|2510
8WHY|1|A|A|2511
8WHY|1|A|A|2512
8WHY|1|A|G|2513
*
8WHY|1|A|U|2567
8WHY|1|A|U|2568
8WHY|1|A|G|2569
8WHY|1|A|A|2570
8WHY|1|A|C|2571
*
8WHY|1|A|G|2594
8WHY|1|A|G|2595
8WHY|1|A|G|2596
*
8WHY|1|A|C|2605
8WHY|1|A|G|2606
8WHY|1|A|G|2607
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 6
- 50S ribosomal protein L33A
- Chain 8
- 50S ribosomal protein L35
- Chain R
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L27
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