J4_8ZGR_003
3D structure
- PDB id
- 8ZGR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with A/A tRNA and mRNA of WNV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 8ZGR|1|LA|A|1451, 8ZGR|1|LA|U|1454
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8ZGR_003 not in the Motif Atlas
- Homologous match to J4_8CRE_003
- Geometric discrepancy: 0.0783
- The information below is about J4_8CRE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8ZGR|1|LA|C|1450
8ZGR|1|LA|A|1451
8ZGR|1|LA|A|1452
8ZGR|1|LA|A|1453
8ZGR|1|LA|U|1454
8ZGR|1|LA|A|1455
8ZGR|1|LA|U|1456
*
8ZGR|1|LA|A|1474
8ZGR|1|LA|G|1475
*
8ZGR|1|LA|U|1876
8ZGR|1|LA|G|1877
8ZGR|1|LA|A|1878
8ZGR|1|LA|U|1879
*
8ZGR|1|LA|A|2351
8ZGR|1|LA|G|2352
Current chains
- Chain LA
- 25S rRNA (3393-MER)
Nearby chains
- Chain LR
- Large ribosomal subunit protein uL22A
- Chain LT
- Large ribosomal subunit protein eL19A
- Chain Lf
- Large ribosomal subunit protein eL31A
Coloring options: