3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
CAUUAAAUC*GCC*GUGAC*GG
Length
19 nucleotides
Bulged bases
9B11|1|S2|G|407
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9B11_013 not in the Motif Atlas
Homologous match to J4_8P9A_021
Geometric discrepancy: 0.1151
The information below is about J4_8P9A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_15241.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

9B11|1|S2|C|98
9B11|1|S2|A|99
9B11|1|S2|U|100
9B11|1|S2|U|101
9B11|1|S2|A|102
9B11|1|S2|A|103
9B11|1|S2|A|104
9B11|1|S2|U|105
9B11|1|S2|C|106
*
9B11|1|S2|G|355
9B11|1|S2|C|356
9B11|1|S2|C|357
*
9B11|1|S2|G|405
9B11|1|S2|U|406
9B11|1|S2|G|407
9B11|1|S2|A|408
9B11|1|S2|C|409
*
9B11|1|S2|G|431
9B11|1|S2|G|432

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
Small ribosomal subunit protein eS4, X isoform
Chain SI
40S ribosomal protein S8
Chain SL
40S ribosomal protein S11
Chain SX
40S ribosomal protein S23

Coloring options:


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