J4_9B24_010
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B24_010 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.1402
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9B24|1|Y|G|1989
9B24|1|Y|A|1990
9B24|1|Y|C|1991
9B24|1|Y|U|1992
9B24|1|Y|G|1993
*
9B24|1|Y|C|2005
9B24|1|Y|A|2006
9B24|1|Y|C|2007
9B24|1|Y|A|2008
9B24|1|Y|G|2009
*
9B24|1|Y|U|2044
9B24|1|Y|G|2045
9B24|1|Y|A|2046
9B24|1|Y|C|2047
*
9B24|1|Y|G|2199
9B24|1|Y|U|2200
9B24|1|Y|A|2201
9B24|1|Y|A|2202
9B24|1|Y|C|2203
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- Large ribosomal subunit protein uL2
Coloring options: