J4_9B24_012
3D structure
- PDB id
- 9B24 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- WT strain gidB mutant mycobacterial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9B24|1|Y|A|2512
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9B24_012 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.21
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9B24|1|Y|C|2509
9B24|1|Y|A|2510
9B24|1|Y|A|2511
9B24|1|Y|A|2512
9B24|1|Y|G|2513
*
9B24|1|Y|U|2567
9B24|1|Y|U|2568
9B24|1|Y|G|2569
9B24|1|Y|A|2570
9B24|1|Y|C|2571
*
9B24|1|Y|G|2594
9B24|1|Y|G|2595
9B24|1|Y|G|2596
*
9B24|1|Y|C|2605
9B24|1|Y|G|2606
9B24|1|Y|G|2607
Current chains
- Chain Y
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL18
- Chain s
- Large ribosomal subunit protein bL27
- Chain y
- Large ribosomal subunit protein bL33A
Coloring options: