J4_9BH5_011
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CAUUAGAGC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9BH5|1|B2|G|94, 9BH5|1|B2|A|339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_011 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3477
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.3
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9BH5|1|B2|C|89
9BH5|1|B2|A|90
9BH5|1|B2|U|91
9BH5|1|B2|U|92
9BH5|1|B2|A|93
9BH5|1|B2|G|94
9BH5|1|B2|A|95
9BH5|1|B2|G|96
9BH5|1|B2|C|97
*
9BH5|1|B2|G|289
9BH5|1|B2|C|290
9BH5|1|B2|C|291
*
9BH5|1|B2|G|337
9BH5|1|B2|U|338
9BH5|1|B2|A|339
9BH5|1|B2|A|340
9BH5|1|B2|C|341
*
9BH5|1|B2|G|363
9BH5|1|B2|G|364
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AE
- Small ribosomal subunit protein eS4
- Chain AI
- Small ribosomal subunit protein eS8
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AX
- Small ribosomal subunit protein uS12
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