J4_9BH5_012
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- AAG*CGAAAG*CCGUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9BH5|1|B2|A|599, 9BH5|1|B2|A|991, 9BH5|1|B2|C|993, 9BH5|1|B2|A|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BH5_012 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.083
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
9BH5|1|B2|A|598
9BH5|1|B2|A|599
9BH5|1|B2|G|600
*
9BH5|1|B2|C|940
9BH5|1|B2|G|941
9BH5|1|B2|A|942
9BH5|1|B2|A|943
9BH5|1|B2|A|944
9BH5|1|B2|G|945
*
9BH5|1|B2|C|986
9BH5|1|B2|C|987
9BH5|1|B2|G|988
9BH5|1|B2|U|989
9BH5|1|B2|A|990
9BH5|1|B2|A|991
9BH5|1|B2|A|992
9BH5|1|B2|C|993
9BH5|1|B2|G|994
9BH5|1|B2|A|995
9BH5|1|B2|U|996
9BH5|1|B2|G|997
*
9BH5|1|B2|U|1062
9BH5|1|B2|U|1063
Current chains
- Chain B2
- 18S rRNA
Nearby chains
- Chain AL
- Small ribosomal subunit protein uS17
- Chain AN
- Small ribosomal subunit protein uS15
- Chain AO
- Small ribosomal subunit protein uS11
- Chain AW
- Ribosomal Protein, Small subunit
- Chain AX
- Small ribosomal subunit protein uS12
- Chain Aa
- Small ribosomal subunit protein eS26
- Chain Cn
- eL41
- Chain Cp
- Large ribosomal subunit protein eL43
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