J4_9BUP_003
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAACUAU*AG*UAAAU*AG
- Length
- 16 nucleotides
- Bulged bases
- 9BUP|1|AA|A|1601, 9BUP|1|AA|U|1604, 9BUP|1|AA|A|1605, 9BUP|1|AA|A|2147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_003 not in the Motif Atlas
- Homologous match to J4_8CRE_003
- Geometric discrepancy: 0.1753
- The information below is about J4_8CRE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BUP|1|AA|C|1600
9BUP|1|AA|A|1601
9BUP|1|AA|A|1602
9BUP|1|AA|C|1603
9BUP|1|AA|U|1604
9BUP|1|AA|A|1605
9BUP|1|AA|U|1606
*
9BUP|1|AA|A|1624
9BUP|1|AA|G|1625
*
9BUP|1|AA|U|2144
9BUP|1|AA|A|2145
9BUP|1|AA|A|2146
9BUP|1|AA|A|2147
9BUP|1|AA|U|2148
*
9BUP|1|AA|A|2645
9BUP|1|AA|G|2646
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A7
- 60S ribosomal protein L31
- Chain AT
- 60S ribosomal protein L19
- Chain AW
- 60S ribosomal protein L17
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