J4_9BUP_013
3D structure
- PDB id
- 9BUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Single particle CryoEM structure of the Pf80S ribosome in non-rotated PRE state (nrt A-P-E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUUAAAAC*GAC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9BUP|1|SA|A|365
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9BUP_013 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0747
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BUP|1|SA|C|101
9BUP|1|SA|A|102
9BUP|1|SA|U|103
9BUP|1|SA|U|104
9BUP|1|SA|A|105
9BUP|1|SA|A|106
9BUP|1|SA|A|107
9BUP|1|SA|A|108
9BUP|1|SA|C|109
*
9BUP|1|SA|G|313
9BUP|1|SA|A|314
9BUP|1|SA|C|315
*
9BUP|1|SA|G|363
9BUP|1|SA|U|364
9BUP|1|SA|A|365
9BUP|1|SA|A|366
9BUP|1|SA|C|367
*
9BUP|1|SA|G|389
9BUP|1|SA|G|390
Current chains
- Chain SA
- 18S ribosomal RNA
Nearby chains
- Chain SF
- 40S ribosomal protein S4
- Chain SL
- 40S ribosomal protein S8
- Chain SQ
- 40S ribosomal protein S23
- Chain SV
- 40S ribosomal protein S11
Coloring options: