J4_9D89_010
3D structure
- PDB id
- 9D89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosomal subunit in complex with PrAMP rumicidin-2 (focused refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9D89|1|D|A|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9D89_010 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.0444
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9D89|1|D|C|2289
9D89|1|D|G|2290
9D89|1|D|A|2291
9D89|1|D|A|2292
9D89|1|D|G|2293
*
9D89|1|D|U|2347
9D89|1|D|U|2348
9D89|1|D|G|2349
9D89|1|D|A|2350
9D89|1|D|C|2351
*
9D89|1|D|G|2374
9D89|1|D|G|2375
9D89|1|D|U|2376
*
9D89|1|D|A|2385
9D89|1|D|G|2386
9D89|1|D|G|2387
Current chains
- Chain D
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain B
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L27
- Chain n
- 50S ribosomal protein L18
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