J4_9DOV_003

3D structure

PDB id

9DOV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

9DOV|1|A1|A|1452, 9DOV|1|A1|U|1455, 9DOV|1|A1|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DOV|1|A1|C|1451
9DOV|1|A1|A|1452
9DOV|1|A1|A|1453
9DOV|1|A1|A|1454
9DOV|1|A1|U|1455
9DOV|1|A1|A|1456
9DOV|1|A1|U|1457
*
9DOV|1|A1|A|1475
9DOV|1|A1|G|1476
*
9DOV|1|A1|U|1877
9DOV|1|A1|G|1878
9DOV|1|A1|A|1879
9DOV|1|A1|U|1880
*
9DOV|1|A1|A|2352
9DOV|1|A1|G|2353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Ad

60S ribosomal protein L31-A