J4_9DOV_004
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9DOV|1|A1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9DOV_004 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.039
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.2
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9DOV|1|A1|G|1492
9DOV|1|A1|G|1493
9DOV|1|A1|U|1494
9DOV|1|A1|U|1495
9DOV|1|A1|C|1496
*
9DOV|1|A1|G|1520
9DOV|1|A1|G|1521
9DOV|1|A1|U|1522
9DOV|1|A1|U|1523
9DOV|1|A1|A|1524
9DOV|1|A1|G|1525
*
9DOV|1|A1|C|1614
9DOV|1|A1|C|1615
*
9DOV|1|A1|G|1829
9DOV|1|A1|G|1830
9DOV|1|A1|U|1831
9DOV|1|A1|C|1832
9DOV|1|A1|G|1833
9DOV|1|A1|U|1834
9DOV|1|A1|A|1835
9DOV|1|A1|C|1836
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S ribosomal protein L19-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Ak
- Large ribosomal subunit protein eL38
- Chain Al
- 60S ribosomal protein L39
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