J4_9DOV_008
3D structure
- PDB id
- 9DOV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.49 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9DOV|1|A1|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9DOV_008 not in the Motif Atlas
- Homologous match to J4_9PN5_008
- Geometric discrepancy: 0.0519
- The information below is about J4_9PN5_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.4
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9DOV|1|A1|C|2654
9DOV|1|A1|U|2655
9DOV|1|A1|A|2656
9DOV|1|A1|A|2657
9DOV|1|A1|G|2658
*
9DOV|1|A1|U|2712
9DOV|1|A1|U|2713
9DOV|1|A1|G|2714
9DOV|1|A1|A|2715
9DOV|1|A1|U|2716
*
9DOV|1|A1|A|2740
9DOV|1|A1|C|2741
9DOV|1|A1|C|2742
*
9DOV|1|A1|G|2751
9DOV|1|A1|U|2752
9DOV|1|A1|G|2753
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ao
- 60S ribosomal protein L42-A
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