J4_9E16_008

3D structure

PDB id

9E16 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9E16|1|I|A|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9E16_008 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1464

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

9E16|1|I|C|2523
9E16|1|I|A|2524
9E16|1|I|A|2525
9E16|1|I|A|2526
9E16|1|I|G|2527
*
9E16|1|I|U|2581
9E16|1|I|U|2582
9E16|1|I|G|2583
9E16|1|I|A|2584
9E16|1|I|C|2585
*
9E16|1|I|G|2608
9E16|1|I|G|2609
9E16|1|I|G|2610
*
9E16|1|I|C|2619
9E16|1|I|G|2620
9E16|1|I|G|2621

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain b

50S ribosomal protein L33 C-