J4_9E1S_008

3D structure

PDB id

9E1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.39 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9E1S|1|I|A|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9E1S_008 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1443

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

9E1S|1|I|C|2523
9E1S|1|I|A|2524
9E1S|1|I|A|2525
9E1S|1|I|A|2526
9E1S|1|I|G|2527
*
9E1S|1|I|U|2581
9E1S|1|I|U|2582
9E1S|1|I|G|2583
9E1S|1|I|A|2584
9E1S|1|I|C|2585
*
9E1S|1|I|G|2608
9E1S|1|I|G|2609
9E1S|1|I|G|2610
*
9E1S|1|I|C|2619
9E1S|1|I|G|2620
9E1S|1|I|G|2621

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain b

50S ribosomal protein bL33-c minus