J4_9F58_008
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GUG
- Length
- 16 nucleotides
- Bulged bases
- 9F58|1|a|A|2657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F58_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.0649
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|a|C|2654
9F58|1|a|U|2655
9F58|1|a|A|2656
9F58|1|a|A|2657
9F58|1|a|G|2658
*
9F58|1|a|U|2712
9F58|1|a|U|2713
9F58|1|a|G|2714
9F58|1|a|A|2715
9F58|1|a|U|2716
*
9F58|1|a|A|2740
9F58|1|a|C|2741
9F58|1|a|C|2742
*
9F58|1|a|G|2751
9F58|1|a|U|2752
9F58|1|a|G|2753
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain M
- 60S ribosomal protein L29
- Chain Z
- 60S ribosomal protein L42-A
- Chain e
- 60S ribosomal protein L5
- Chain u
- 60S ribosomal protein L21-A
Coloring options: