J4_9F9S_022

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9F9S_022 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0714

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|M1|U|3010
9F9S|1|M1|A|3011
9F9S|1|M1|A|3012
*
9F9S|1|M1|U|3042
9F9S|1|M1|C|3043
*
9F9S|1|M1|G|3098
9F9S|1|M1|C|3099
9F9S|1|M1|U|3100
*
9F9S|1|M1|A|3134
9F9S|1|M1|U|3135
9F9S|1|M1|G|3136

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MJ

60S ribosomal protein L16-A

Chain Ma

60S ribosomal protein L23-A

Chain Mx

60S ribosomal protein L3