J4_9F9S_024
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9F9S|1|R1|A|623, 9F9S|1|R1|C|1022, 9F9S|1|R1|A|1026, 9F9S|1|R1|C|1028, 9F9S|1|R1|U|1029, 9F9S|1|R1|A|1030, 9F9S|1|R1|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_024 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.3796
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|R1|A|622
9F9S|1|R1|A|623
9F9S|1|R1|G|624
*
9F9S|1|R1|C|975
9F9S|1|R1|G|976
9F9S|1|R1|A|977
9F9S|1|R1|A|978
9F9S|1|R1|A|979
9F9S|1|R1|G|980
*
9F9S|1|R1|C|1021
9F9S|1|R1|C|1022
9F9S|1|R1|A|1023
9F9S|1|R1|U|1024
9F9S|1|R1|A|1025
9F9S|1|R1|A|1026
9F9S|1|R1|A|1027
9F9S|1|R1|C|1028
9F9S|1|R1|U|1029
9F9S|1|R1|A|1030
9F9S|1|R1|U|1031
9F9S|1|R1|G|1032
*
9F9S|1|R1|U|1103
9F9S|1|R1|U|1104
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Md
- 60S ribosomal protein L41-A
- Chain RA
- Small ribosomal subunit protein eS26A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rn
- 40S ribosomal protein S13
- Chain Ro
- 40S ribosomal protein S14-B
- Chain Rw
- 40S ribosomal protein S22-A
- Chain Rx
- 40S ribosomal protein S23-A
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