J4_9G6J_003
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9G6J|1|1|A|1448, 9G6J|1|1|U|1451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_003 not in the Motif Atlas
- Homologous match to J4_8CRE_003
- Geometric discrepancy: 0.0617
- The information below is about J4_8CRE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_87855.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9G6J|1|1|C|1447
9G6J|1|1|A|1448
9G6J|1|1|A|1449
9G6J|1|1|A|1450
9G6J|1|1|U|1451
9G6J|1|1|A|1452
9G6J|1|1|U|1453
*
9G6J|1|1|A|1471
9G6J|1|1|G|1472
*
9G6J|1|1|U|1873
9G6J|1|1|G|1874
9G6J|1|1|A|1875
9G6J|1|1|U|1876
*
9G6J|1|1|A|2330
9G6J|1|1|G|2331
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AE
- Ribosomal 60S subunit protein L31B
- Chain x
- Ribosomal 60S subunit protein L17B
- Chain z
- Ribosomal protein L19
Coloring options: