J4_9GHH_001

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9GHH|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHH_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1282

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9GHH|1|A|C|271
9GHH|1|A|C|272
*
9GHH|1|A|G|416
9GHH|1|A|A|417
9GHH|1|A|G|418
9GHH|1|A|U|419
9GHH|1|A|A|420
9GHH|1|A|C|421
*
9GHH|1|A|G|445
9GHH|1|A|G|446
9GHH|1|A|A|447
9GHH|1|A|A|448
9GHH|1|A|U|449
9GHH|1|A|C|450
9GHH|1|A|U|451
9GHH|1|A|G|452
*
9GHH|1|A|U|467
9GHH|1|A|A|468
9GHH|1|A|A|469
9GHH|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28