J4_9GHH_008

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHH_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0493

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHH|1|A|G|1799
9GHH|1|A|A|1800
9GHH|1|A|C|1801
9GHH|1|A|U|1802
9GHH|1|A|G|1803
*
9GHH|1|A|C|1815
9GHH|1|A|A|1816
9GHH|1|A|C|1817
9GHH|1|A|A|1818
9GHH|1|A|G|1819
*
9GHH|1|A|U|1854
9GHH|1|A|G|1855
9GHH|1|A|A|1856
9GHH|1|A|C|1857
*
9GHH|1|A|G|2002
9GHH|1|A|U|2003
9GHH|1|A|A|2004
9GHH|1|A|A|2005
9GHH|1|A|C|2006

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2