J4_9HA4_007

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9HA4|1|A|G|2286, 9HA4|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA4_007 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.2983

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9HA4|1|A|C|2285
9HA4|1|A|G|2286
9HA4|1|A|A|2287
9HA4|1|A|A|2288
9HA4|1|A|G|2289
*
9HA4|1|A|U|2343
9HA4|1|A|U|2344
9HA4|1|A|G|2345
9HA4|1|A|A|2346
9HA4|1|A|C|2347
*
9HA4|1|A|G|2370
9HA4|1|A|G|2371
9HA4|1|A|U|2372
*
9HA4|1|A|A|2381
9HA4|1|A|G|2382
9HA4|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL18

Chain W

Large ribosomal subunit protein bL27