J4_9HA6_007

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA6_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1271

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9HA6|1|A|A|1772
9HA6|1|A|A|1773
9HA6|1|A|C|1774
9HA6|1|A|U|1775
9HA6|1|A|G|1776
*
9HA6|1|A|C|1788
9HA6|1|A|A|1789
9HA6|1|A|C|1790
9HA6|1|A|A|1791
9HA6|1|A|G|1792
*
9HA6|1|A|U|1827
9HA6|1|A|G|1828
9HA6|1|A|A|1829
9HA6|1|A|C|1830
*
9HA6|1|A|G|1975
9HA6|1|A|U|1976
9HA6|1|A|A|1977
9HA6|1|A|A|1978
9HA6|1|A|U|1979

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2