J4_9HM0_009
3D structure
- PDB id
- 9HM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGA*UUAAAA*UAGUAAACUAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 9HM0|1|r|A|880, 9HM0|1|r|C|882, 9HM0|1|r|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9HM0_009 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1281
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9HM0|1|r|G|684
9HM0|1|r|G|685
9HM0|1|r|A|686
*
9HM0|1|r|U|829
9HM0|1|r|U|830
9HM0|1|r|A|831
9HM0|1|r|A|832
9HM0|1|r|A|833
9HM0|1|r|A|834
*
9HM0|1|r|U|875
9HM0|1|r|A|876
9HM0|1|r|G|877
9HM0|1|r|U|878
9HM0|1|r|A|879
9HM0|1|r|A|880
9HM0|1|r|A|881
9HM0|1|r|C|882
9HM0|1|r|U|883
9HM0|1|r|A|884
9HM0|1|r|U|885
9HM0|1|r|G|886
*
9HM0|1|r|C|944
9HM0|1|r|C|945
Current chains
- Chain r
- 15S mitochondrial rRNA
Nearby chains
- Chain 1
- Small ribosomal subunit protein mS38
- Chain H
- Small ribosomal subunit protein uS8m
- Chain L
- Small ribosomal subunit protein uS12m
- Chain O
- Small ribosomal subunit protein uS15m
- Chain Q
- Small ribosomal subunit protein uS17m
- Chain T
- Small ribosomal subunit protein bS21m
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