J4_9I3L_002

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9I3L|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I3L_002 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2591

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9I3L|1|b|C|268
9I3L|1|b|C|269
*
9I3L|1|b|G|370
9I3L|1|b|A|371
9I3L|1|b|G|372
9I3L|1|b|U|373
9I3L|1|b|A|374
9I3L|1|b|G|375
*
9I3L|1|b|U|399
9I3L|1|b|G|400
9I3L|1|b|A|401
9I3L|1|b|A|402
9I3L|1|b|U|403
9I3L|1|b|A|404
9I3L|1|b|U|405
9I3L|1|b|G|406
*
9I3L|1|b|C|421
9I3L|1|b|A|422
9I3L|1|b|A|423
9I3L|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain h

Large ribosomal subunit protein bL9