J4_9I3L_011
3D structure
- PDB id
- 9I3L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 9I3L|1|b|A|2292
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9I3L_011 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2563
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I3L|1|b|C|2289
9I3L|1|b|G|2290
9I3L|1|b|A|2291
9I3L|1|b|A|2292
9I3L|1|b|G|2293
*
9I3L|1|b|U|2347
9I3L|1|b|U|2348
9I3L|1|b|G|2349
9I3L|1|b|A|2350
9I3L|1|b|C|2351
*
9I3L|1|b|G|2374
9I3L|1|b|G|2375
9I3L|1|b|U|2376
*
9I3L|1|b|A|2385
9I3L|1|b|G|2386
9I3L|1|b|G|2387
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL33
- Chain 7
- Large ribosomal subunit protein bL35
- Chain o
- Large ribosomal subunit protein uL18
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: