J4_9I88_001

3D structure

PDB id

9I88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9I88|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I88_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.1923

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9I88|1|A|C|271
9I88|1|A|C|272
*
9I88|1|A|G|416
9I88|1|A|A|417
9I88|1|A|G|418
9I88|1|A|U|419
9I88|1|A|A|420
9I88|1|A|C|421
*
9I88|1|A|G|445
9I88|1|A|G|446
9I88|1|A|A|447
9I88|1|A|A|448
9I88|1|A|U|449
9I88|1|A|C|450
9I88|1|A|U|451
9I88|1|A|G|452
*
9I88|1|A|U|467
9I88|1|A|A|468
9I88|1|A|A|469
9I88|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL28