J4_9I88_010
3D structure
- PDB id
- 9I88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the wild-type Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 9I88|1|A|A|2315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9I88_010 not in the Motif Atlas
- Homologous match to J4_7A0S_009
- Geometric discrepancy: 0.2266
- The information below is about J4_7A0S_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I88|1|A|C|2312
9I88|1|A|A|2313
9I88|1|A|A|2314
9I88|1|A|A|2315
9I88|1|A|G|2316
*
9I88|1|A|U|2370
9I88|1|A|U|2371
9I88|1|A|G|2372
9I88|1|A|A|2373
9I88|1|A|C|2374
*
9I88|1|A|G|2397
9I88|1|A|G|2398
9I88|1|A|G|2399
*
9I88|1|A|C|2408
9I88|1|A|G|2409
9I88|1|A|G|2410
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL33A
- Chain 8
- Large ribosomal subunit protein bL35
- Chain R
- Large ribosomal subunit protein uL18
- Chain Z
- Large ribosomal subunit protein bL27
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