J4_9JMK_001

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9JMK|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JMK_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.2873

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9JMK|1|A|C|268
9JMK|1|A|C|269
*
9JMK|1|A|G|370
9JMK|1|A|A|371
9JMK|1|A|G|372
9JMK|1|A|U|373
9JMK|1|A|A|374
9JMK|1|A|G|375
*
9JMK|1|A|U|399
9JMK|1|A|G|400
9JMK|1|A|A|401
9JMK|1|A|A|402
9JMK|1|A|U|403
9JMK|1|A|A|404
9JMK|1|A|U|405
9JMK|1|A|G|406
*
9JMK|1|A|C|421
9JMK|1|A|A|422
9JMK|1|A|A|423
9JMK|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28