J4_9JMK_005

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9JMK|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9JMK_005 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2416

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9JMK|1|A|U|1313
9JMK|1|A|C|1314
*
9JMK|1|A|G|1338
9JMK|1|A|G|1339
9JMK|1|A|U|1340
9JMK|1|A|G|1341
9JMK|1|A|A|1342
9JMK|1|A|G|1343
*
9JMK|1|A|C|1404
9JMK|1|A|U|1405
*
9JMK|1|A|A|1597
9JMK|1|A|A|1598
9JMK|1|A|U|1599
9JMK|1|A|C|1600
9JMK|1|A|G|1601
9JMK|1|A|U|1602
9JMK|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23